Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BO4Y-N1-BDNA-1_235YY7LT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64807788 total, 60904 skipped (flags/unmapped)
Fragments: 32521684 total (32197621 tlen-paired, 4820 hash-paired, 3309 singletons, 11761 discordant, 304173 orphans, 5499 too large [>5000 bp], 8215001 duplicates)
Reads: 69345517 total, 52033 skipped (flags/unmapped)
Fragments: 34801236 total (34465079 tlen-paired, 3625 hash-paired, 3500 singletons, 8330 discordant, 320702 orphans, 7607 too large [>5000 bp], 8699690 duplicates)
Reads: 71467005 total, 58144 skipped (flags/unmapped)
Fragments: 35860928 total (35506212 tlen-paired, 4838 hash-paired, 3630 singletons, 11499 discordant, 334749 orphans, 12692 too large [>5000 bp], 9017574 duplicates)
Reads: 72323886 total, 83290 skipped (flags/unmapped)
Fragments: 36436796 total (35464988 tlen-paired, 3136 hash-paired, 3751 singletons, 182950 discordant, 781971 orphans, 76363 too large [>5000 bp], 9132116 duplicates)