Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FXQ-N1-BDNA-1_2375WFLT3_s67.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FXQ-N1-BDNA-1_2375WFLT3_s67.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FXQ-N1-BDNA-1_2375WFLT3_s67.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FXQ-N1-BDNA-1_2375WFLT3_s67.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81205664 total, 68959 skipped (flags/unmapped)
Fragments: 40831928 total (40273200 tlen-paired, 3484 hash-paired, 1092 singletons, 15963 discordant, 538189 orphans, 6065 too large [>5000 bp], 12434034 duplicates)
Reads: 81667966 total, 65947 skipped (flags/unmapped)
Fragments: 41063993 total (40485169 tlen-paired, 5023 hash-paired, 1044 singletons, 12904 discordant, 559853 orphans, 17465 too large [>5000 bp], 12387304 duplicates)
Reads: 87471505 total, 63568 skipped (flags/unmapped)
Fragments: 43985540 total (43386297 tlen-paired, 3402 hash-paired, 1178 singletons, 11310 discordant, 583353 orphans, 10694 too large [>5000 bp], 13187783 duplicates)
Reads: 90802501 total, 119920 skipped (flags/unmapped)
Fragments: 45924390 total (44111258 tlen-paired, 2612 hash-paired, 1277 singletons, 356163 discordant, 1453080 orphans, 144079 too large [>5000 bp], 13758802 duplicates)