Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_2375WFLT3_s50.recalibrated.bam.baiThe index file is older than the data file: 1029_BRTT-N1-BDNA-1_2375WFLT3_s50.recalibrated.bam.bai

The index file is older than the data file: 1029_BRTT-N1-BDNA-1_2375WFLT3_s50.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BRTT-N1-BDNA-1_2375WFLT3_s50.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60627319 total, 58174 skipped (flags/unmapped)
Fragments: 30449941 total (30092993 tlen-paired, 4314 hash-paired, 980 singletons, 10619 discordant, 341035 orphans, 5639 too large [>5000 bp], 7951154 duplicates)
Reads: 66106920 total, 48392 skipped (flags/unmapped)
Fragments: 33209107 total (32824573 tlen-paired, 2676 hash-paired, 1090 singletons, 7228 discordant, 373540 orphans, 7472 too large [>5000 bp], 8572619 duplicates)
Reads: 66951619 total, 53226 skipped (flags/unmapped)
Fragments: 33625943 total (33227957 tlen-paired, 5175 hash-paired, 1040 singletons, 9892 discordant, 381879 orphans, 14713 too large [>5000 bp], 8705585 duplicates)
Reads: 68348599 total, 90238 skipped (flags/unmapped)
Fragments: 34506585 total (33346593 tlen-paired, 3216 hash-paired, 1133 singletons, 223315 discordant, 932328 orphans, 89326 too large [>5000 bp], 8878445 duplicates)