Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_G94-N1-BDNA-1_2375WFLT3_s69.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G94-N1-BDNA-1_2375WFLT3_s69.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G94-N1-BDNA-1_2375WFLT3_s69.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_G94-N1-BDNA-1_2375WFLT3_s69.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68884999 total, 59700 skipped (flags/unmapped)
Fragments: 34598671 total (34201455 tlen-paired, 4235 hash-paired, 1020 singletons, 10776 discordant, 381185 orphans, 5081 too large [>5000 bp], 10047731 duplicates)
Reads: 69341464 total, 55808 skipped (flags/unmapped)
Fragments: 34828187 total (34412242 tlen-paired, 4738 hash-paired, 928 singletons, 9079 discordant, 401200 orphans, 15705 too large [>5000 bp], 10001283 duplicates)
Reads: 75641803 total, 53883 skipped (flags/unmapped)
Fragments: 37996026 total (37561037 tlen-paired, 3969 hash-paired, 1169 singletons, 7458 discordant, 422393 orphans, 9715 too large [>5000 bp], 10806549 duplicates)
Reads: 77563880 total, 94705 skipped (flags/unmapped)
Fragments: 39153693 total (37853639 tlen-paired, 2522 hash-paired, 1126 singletons, 256027 discordant, 1040379 orphans, 101647 too large [>5000 bp], 11190742 duplicates)