Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_8BO-N1-BDNA-1_2375WFLT3_s18.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_8BO-N1-BDNA-1_2375WFLT3_s18.recalibrated.bam.baiThe index file is older than the data file: 1029_8BO-N1-BDNA-1_2375WFLT3_s18.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_8BO-N1-BDNA-1_2375WFLT3_s18.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66443560 total, 57741 skipped (flags/unmapped)
Fragments: 33405136 total (32955821 tlen-paired, 3591 hash-paired, 1079 singletons, 11223 discordant, 433422 orphans, 5024 too large [>5000 bp], 9748042 duplicates)
Reads: 72070635 total, 53365 skipped (flags/unmapped)
Fragments: 36235649 total (35751997 tlen-paired, 3840 hash-paired, 1079 singletons, 8270 discordant, 470463 orphans, 8757 too large [>5000 bp], 10374147 duplicates)
Reads: 73549726 total, 56047 skipped (flags/unmapped)
Fragments: 36976372 total (36470498 tlen-paired, 6046 hash-paired, 1122 singletons, 11367 discordant, 487339 orphans, 14698 too large [>5000 bp], 10658529 duplicates)
Reads: 75022990 total, 98330 skipped (flags/unmapped)
Fragments: 37954436 total (36441926 tlen-paired, 2552 hash-paired, 1194 singletons, 291746 discordant, 1217018 orphans, 117000 too large [>5000 bp], 10869946 duplicates)