Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BIHC-N1-BDNA-1_2375WFLT3_s33.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIHC-N1-BDNA-1_2375WFLT3_s33.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIHC-N1-BDNA-1_2375WFLT3_s33.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BIHC-N1-BDNA-1_2375WFLT3_s33.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 55391029 total, 45271 skipped (flags/unmapped)
Fragments: 27906272 total (27420091 tlen-paired, 2230 hash-paired, 924 singletons, 9125 discordant, 473902 orphans, 4020 too large [>5000 bp], 7416985 duplicates)
Reads: 60679152 total, 42668 skipped (flags/unmapped)
Fragments: 30573714 total (30037198 tlen-paired, 3143 hash-paired, 857 singletons, 6355 discordant, 526161 orphans, 8037 too large [>5000 bp], 7934693 duplicates)
Reads: 55846375 total, 43104 skipped (flags/unmapped)
Fragments: 28135991 total (27638345 tlen-paired, 2370 hash-paired, 836 singletons, 7333 discordant, 487107 orphans, 9616 too large [>5000 bp], 7397465 duplicates)
Reads: 62791941 total, 80079 skipped (flags/unmapped)
Fragments: 31899247 total (30199556 tlen-paired, 2384 hash-paired, 960 singletons, 337803 discordant, 1358544 orphans, 136436 too large [>5000 bp], 8294542 duplicates)