Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_2375WFLT3_s52.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_2375WFLT3_s52.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_2375WFLT3_s52.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BSOQ-N1-BDNA-1_2375WFLT3_s52.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63515623 total, 52711 skipped (flags/unmapped)
Fragments: 31910250 total (31529350 tlen-paired, 3219 hash-paired, 1025 singletons, 10179 discordant, 366477 orphans, 4957 too large [>5000 bp], 9107652 duplicates)
Reads: 69205106 total, 48667 skipped (flags/unmapped)
Fragments: 34772289 total (34357286 tlen-paired, 3395 hash-paired, 1088 singletons, 7141 discordant, 403379 orphans, 8164 too large [>5000 bp], 9761058 duplicates)
Reads: 70293124 total, 51915 skipped (flags/unmapped)
Fragments: 35316054 total (34891897 tlen-paired, 4187 hash-paired, 1035 singletons, 10219 discordant, 408716 orphans, 9426 too large [>5000 bp], 9984975 duplicates)
Reads: 71654456 total, 88675 skipped (flags/unmapped)
Fragments: 36196163 total (34923786 tlen-paired, 2938 hash-paired, 1040 singletons, 245572 discordant, 1022827 orphans, 98661 too large [>5000 bp], 10169735 duplicates)