Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BP21-N1-BDNA-1_2375WFLT3_s44.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BP21-N1-BDNA-1_2375WFLT3_s44.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BP21-N1-BDNA-1_2375WFLT3_s44.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BP21-N1-BDNA-1_2375WFLT3_s44.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 83199724 total, 76881 skipped (flags/unmapped)
Fragments: 41820279 total (41267124 tlen-paired, 5408 hash-paired, 1315 singletons, 14606 discordant, 531826 orphans, 7713 too large [>5000 bp], 13255694 duplicates)
Reads: 91772264 total, 69282 skipped (flags/unmapped)
Fragments: 46133020 total (45518781 tlen-paired, 3890 hash-paired, 1360 singletons, 14239 discordant, 594750 orphans, 16526 too large [>5000 bp], 14509887 duplicates)
Reads: 89570715 total, 67118 skipped (flags/unmapped)
Fragments: 45030329 total (44437217 tlen-paired, 3492 hash-paired, 1436 singletons, 10515 discordant, 577669 orphans, 11022 too large [>5000 bp], 14085245 duplicates)
Reads: 93631770 total, 118363 skipped (flags/unmapped)
Fragments: 47356279 total (45514335 tlen-paired, 3831 hash-paired, 1437 singletons, 355172 discordant, 1481504 orphans, 141895 too large [>5000 bp], 14785398 duplicates)