Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H6Y-N1-BDNA-1_2375WFLT3_s78.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H6Y-N1-BDNA-1_2375WFLT3_s78.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H6Y-N1-BDNA-1_2375WFLT3_s78.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H6Y-N1-BDNA-1_2375WFLT3_s78.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 50021077 total, 44742 skipped (flags/unmapped)
Fragments: 25136114 total (24819180 tlen-paired, 3498 hash-paired, 813 singletons, 9099 discordant, 303524 orphans, 4222 too large [>5000 bp], 6553067 duplicates)
Reads: 54364133 total, 38405 skipped (flags/unmapped)
Fragments: 27322336 total (26982346 tlen-paired, 2355 hash-paired, 829 singletons, 6295 discordant, 330511 orphans, 6198 too large [>5000 bp], 6977564 duplicates)
Reads: 55344993 total, 42518 skipped (flags/unmapped)
Fragments: 27810247 total (27463411 tlen-paired, 3219 hash-paired, 792 singletons, 8612 discordant, 334213 orphans, 8493 too large [>5000 bp], 7159201 duplicates)
Reads: 56342571 total, 73027 skipped (flags/unmapped)
Fragments: 28472577 total (27434235 tlen-paired, 2189 hash-paired, 832 singletons, 199023 discordant, 836298 orphans, 80760 too large [>5000 bp], 7307851 duplicates)