Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_HX6-N1-BDNA-1_2375WFLT3_s82.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HX6-N1-BDNA-1_2375WFLT3_s82.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HX6-N1-BDNA-1_2375WFLT3_s82.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_HX6-N1-BDNA-1_2375WFLT3_s82.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78915501 total, 71294 skipped (flags/unmapped)
Fragments: 39647327 total (39166417 tlen-paired, 4453 hash-paired, 1155 singletons, 12870 discordant, 462432 orphans, 6570 too large [>5000 bp], 12017192 duplicates)
Reads: 86553543 total, 63059 skipped (flags/unmapped)
Fragments: 43490770 total (42966321 tlen-paired, 2989 hash-paired, 1391 singletons, 9002 discordant, 511067 orphans, 10701 too large [>5000 bp], 12952427 duplicates)
Reads: 89471008 total, 121176 skipped (flags/unmapped)
Fragments: 45197946 total (43589228 tlen-paired, 3266 hash-paired, 1381 singletons, 311410 discordant, 1292661 orphans, 123991 too large [>5000 bp], 13460489 duplicates)
Reads: 87351156 total, 70526 skipped (flags/unmapped)
Fragments: 43885676 total (43338950 tlen-paired, 7563 hash-paired, 1287 singletons, 12717 discordant, 525159 orphans, 17862 too large [>5000 bp], 13183628 duplicates)