Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I0S-N1-BDNA-1_2375WFLT3_s83.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I0S-N1-BDNA-1_2375WFLT3_s83.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I0S-N1-BDNA-1_2375WFLT3_s83.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I0S-N1-BDNA-1_2375WFLT3_s83.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82137752 total, 71618 skipped (flags/unmapped)
Fragments: 41269629 total (40765693 tlen-paired, 4067 hash-paired, 1244 singletons, 14789 discordant, 483836 orphans, 5978 too large [>5000 bp], 12706565 duplicates)
Reads: 90056062 total, 64520 skipped (flags/unmapped)
Fragments: 45247544 total (44708368 tlen-paired, 4624 hash-paired, 1252 singletons, 10352 discordant, 522948 orphans, 10327 too large [>5000 bp], 13740795 duplicates)
Reads: 91257562 total, 70298 skipped (flags/unmapped)
Fragments: 45846595 total (45289375 tlen-paired, 4420 hash-paired, 1297 singletons, 14740 discordant, 536763 orphans, 16067 too large [>5000 bp], 13992080 duplicates)
Reads: 93386530 total, 122321 skipped (flags/unmapped)
Fragments: 47168387 total (45525119 tlen-paired, 4011 hash-paired, 1362 singletons, 316710 discordant, 1321185 orphans, 124991 too large [>5000 bp], 14316860 duplicates)