Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BCTO-N1-BDNA-1_2375WFLT3_s25.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCTO-N1-BDNA-1_2375WFLT3_s25.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCTO-N1-BDNA-1_2375WFLT3_s25.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BCTO-N1-BDNA-1_2375WFLT3_s25.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80863224 total, 60030 skipped (flags/unmapped)
Fragments: 40660651 total (40111141 tlen-paired, 2841 hash-paired, 1223 singletons, 9117 discordant, 536329 orphans, 9722 too large [>5000 bp], 11924570 duplicates)
Reads: 82761624 total, 63966 skipped (flags/unmapped)
Fragments: 41612603 total (41034957 tlen-paired, 3047 hash-paired, 1245 singletons, 12997 discordant, 560357 orphans, 17027 too large [>5000 bp], 12261139 duplicates)
Reads: 75077587 total, 66415 skipped (flags/unmapped)
Fragments: 37748203 total (37235402 tlen-paired, 3428 hash-paired, 1261 singletons, 13111 discordant, 495001 orphans, 5514 too large [>5000 bp], 11232978 duplicates)
Reads: 84701348 total, 109827 skipped (flags/unmapped)
Fragments: 42856075 total (41130796 tlen-paired, 3087 hash-paired, 1255 singletons, 333585 discordant, 1387352 orphans, 133989 too large [>5000 bp], 12533094 duplicates)