Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H0U-N1-BDNA-1_2375WFLT3_s75.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H0U-N1-BDNA-1_2375WFLT3_s75.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H0U-N1-BDNA-1_2375WFLT3_s75.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H0U-N1-BDNA-1_2375WFLT3_s75.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67171202 total, 57718 skipped (flags/unmapped)
Fragments: 33739879 total (33347288 tlen-paired, 3536 hash-paired, 1033 singletons, 12333 discordant, 375689 orphans, 5224 too large [>5000 bp], 9345396 duplicates)
Reads: 73486936 total, 51117 skipped (flags/unmapped)
Fragments: 36915678 total (36491958 tlen-paired, 2625 hash-paired, 1136 singletons, 8994 discordant, 410965 orphans, 8282 too large [>5000 bp], 10006629 duplicates)
Reads: 75809615 total, 95066 skipped (flags/unmapped)
Fragments: 38256158 total (37011751 tlen-paired, 2824 hash-paired, 1195 singletons, 245296 discordant, 995092 orphans, 99260 too large [>5000 bp], 10429226 duplicates)
Reads: 67605631 total, 54463 skipped (flags/unmapped)
Fragments: 33959684 total (33559018 tlen-paired, 2989 hash-paired, 1015 singletons, 10203 discordant, 386459 orphans, 9637 too large [>5000 bp], 9299831 duplicates)