Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_2375WFLT3_s20.recalibrated.bam.baiThe index file is older than the data file: 1029_BA0-N2-BDNA-1_2375WFLT3_s20.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_2375WFLT3_s20.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BA0-N2-BDNA-1_2375WFLT3_s20.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63107094 total, 55483 skipped (flags/unmapped)
Fragments: 31724792 total (31303834 tlen-paired, 3161 hash-paired, 883 singletons, 10330 discordant, 406584 orphans, 4747 too large [>5000 bp], 8465587 duplicates)
Reads: 69717683 total, 53016 skipped (flags/unmapped)
Fragments: 35048525 total (34581286 tlen-paired, 3692 hash-paired, 904 singletons, 9758 discordant, 452885 orphans, 10703 too large [>5000 bp], 9256105 duplicates)
Reads: 68093220 total, 49586 skipped (flags/unmapped)
Fragments: 34234137 total (33782740 tlen-paired, 2988 hash-paired, 984 singletons, 7097 discordant, 440328 orphans, 8336 too large [>5000 bp], 8999689 duplicates)
Reads: 70886244 total, 86273 skipped (flags/unmapped)
Fragments: 35862130 total (34440536 tlen-paired, 2362 hash-paired, 948 singletons, 273825 discordant, 1144459 orphans, 110559 too large [>5000 bp], 9411674 duplicates)