Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_2375WFLT3_s56.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_2375WFLT3_s56.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_2375WFLT3_s56.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_DOC-N1-BDNA-1_2375WFLT3_s56.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 76479984 total, 71773 skipped (flags/unmapped)
Fragments: 38517174 total (37859621 tlen-paired, 3848 hash-paired, 1269 singletons, 14610 discordant, 637826 orphans, 6479 too large [>5000 bp], 11875433 duplicates)
Reads: 83240155 total, 62095 skipped (flags/unmapped)
Fragments: 41931272 total (41211252 tlen-paired, 3020 hash-paired, 1270 singletons, 10470 discordant, 705260 orphans, 11023 too large [>5000 bp], 12713040 duplicates)
Reads: 84365617 total, 68009 skipped (flags/unmapped)
Fragments: 42488912 total (41748799 tlen-paired, 6283 hash-paired, 1230 singletons, 14018 discordant, 718582 orphans, 19798 too large [>5000 bp], 12974403 duplicates)
Reads: 87427634 total, 117336 skipped (flags/unmapped)
Fragments: 44398481 total (42113440 tlen-paired, 2395 hash-paired, 1379 singletons, 446972 discordant, 1834295 orphans, 174505 too large [>5000 bp], 13391139 duplicates)