Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BICA-N1-BDNA-1_2375WFLT3_s32.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BICA-N1-BDNA-1_2375WFLT3_s32.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BICA-N1-BDNA-1_2375WFLT3_s32.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BICA-N1-BDNA-1_2375WFLT3_s32.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70336609 total, 61731 skipped (flags/unmapped)
Fragments: 35361802 total (34883253 tlen-paired, 4356 hash-paired, 1030 singletons, 13255 discordant, 459908 orphans, 6106 too large [>5000 bp], 10010442 duplicates)
Reads: 70479178 total, 56136 skipped (flags/unmapped)
Fragments: 35435436 total (34943892 tlen-paired, 3472 hash-paired, 998 singletons, 11022 discordant, 476052 orphans, 14610 too large [>5000 bp], 9917207 duplicates)
Reads: 76187440 total, 55874 skipped (flags/unmapped)
Fragments: 38306601 total (37792027 tlen-paired, 3986 hash-paired, 1158 singletons, 9748 discordant, 499682 orphans, 9602 too large [>5000 bp], 10631301 duplicates)
Reads: 79230477 total, 97348 skipped (flags/unmapped)
Fragments: 40061913 total (38516657 tlen-paired, 3151 hash-paired, 1204 singletons, 304150 discordant, 1236751 orphans, 123629 too large [>5000 bp], 11134377 duplicates)