Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FR4-N1-BDNA-1_2375WFLT3_s65.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_FR4-N1-BDNA-1_2375WFLT3_s65.recalibrated.bam.baiThe index file is older than the data file: 1029_FR4-N1-BDNA-1_2375WFLT3_s65.recalibrated.bam.baiThe index file is older than the data file: 1029_FR4-N1-BDNA-1_2375WFLT3_s65.recalibrated.bam.bai


Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 42633701 total, 36076 skipped (flags/unmapped)
Fragments: 21417864 total (21164037 tlen-paired, 2323 hash-paired, 654 singletons, 6763 discordant, 244087 orphans, 3319 too large [>5000 bp], 6044502 duplicates)
Reads: 46978478 total, 32671 skipped (flags/unmapped)
Fragments: 23605109 total (23322986 tlen-paired, 1681 hash-paired, 701 singletons, 5045 discordant, 274696 orphans, 5493 too large [>5000 bp], 6570579 duplicates)
Reads: 47390298 total, 34529 skipped (flags/unmapped)
Fragments: 23808359 total (23517571 tlen-paired, 2676 hash-paired, 698 singletons, 6617 discordant, 280797 orphans, 10273 too large [>5000 bp], 6647250 duplicates)
Reads: 48209729 total, 63303 skipped (flags/unmapped)
Fragments: 24351619 total (23494431 tlen-paired, 2318 hash-paired, 716 singletons, 165656 discordant, 688498 orphans, 66201 too large [>5000 bp], 6755461 duplicates)