Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EMM-N1-BDNA-1_2375WFLT3_s62.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EMM-N1-BDNA-1_2375WFLT3_s62.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EMM-N1-BDNA-1_2375WFLT3_s62.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EMM-N1-BDNA-1_2375WFLT3_s62.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68673046 total, 60363 skipped (flags/unmapped)
Fragments: 34521775 total (34067034 tlen-paired, 3333 hash-paired, 1096 singletons, 11367 discordant, 438945 orphans, 4587 too large [>5000 bp], 10350498 duplicates)
Reads: 74329036 total, 55353 skipped (flags/unmapped)
Fragments: 37369382 total (36876678 tlen-paired, 2574 hash-paired, 1141 singletons, 7821 discordant, 481168 orphans, 8614 too large [>5000 bp], 11069384 duplicates)
Reads: 75770106 total, 60831 skipped (flags/unmapped)
Fragments: 38090911 total (37571447 tlen-paired, 4176 hash-paired, 1047 singletons, 11041 discordant, 503200 orphans, 15850 too large [>5000 bp], 11317084 duplicates)
Reads: 77470571 total, 107718 skipped (flags/unmapped)
Fragments: 39184919 total (37638288 tlen-paired, 3609 hash-paired, 1187 singletons, 299287 discordant, 1242548 orphans, 118375 too large [>5000 bp], 11551968 duplicates)