Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_DV0-N1-BDNA-1_2375WFLT3_s57.recalibrated.bam.bai
The index file is older than the data file: 1029_DV0-N1-BDNA-1_2375WFLT3_s57.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_DV0-N1-BDNA-1_2375WFLT3_s57.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_DV0-N1-BDNA-1_2375WFLT3_s57.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 87334083 total, 63374 skipped (flags/unmapped)
Fragments: 43937834 total (43295432 tlen-paired, 3659 hash-paired, 1235 singletons, 11906 discordant, 625602 orphans, 10939 too large [>5000 bp], 13536156 duplicates)
Reads: 80685851 total, 65317 skipped (flags/unmapped)
Fragments: 40588521 total (39976391 tlen-paired, 4489 hash-paired, 1181 singletons, 13447 discordant, 593013 orphans, 18843 too large [>5000 bp], 12583550 duplicates)
Reads: 80075648 total, 69853 skipped (flags/unmapped)
Fragments: 40282025 total (39689540 tlen-paired, 3960 hash-paired, 1102 singletons, 16076 discordant, 571347 orphans, 7097 too large [>5000 bp], 12607391 duplicates)
Reads: 90535691 total, 118445 skipped (flags/unmapped)
Fragments: 45829506 total (43890423 tlen-paired, 2936 hash-paired, 1302 singletons, 381873 discordant, 1552972 orphans, 156254 too large [>5000 bp], 14115384 duplicates)