Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_2375WFLT3_s76.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_2375WFLT3_s76.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_2375WFLT3_s76.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_H3R-N1-BDNA-1_2375WFLT3_s76.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75321793 total, 59450 skipped (flags/unmapped)
Fragments: 37857919 total (37358913 tlen-paired, 3223 hash-paired, 1137 singletons, 10708 discordant, 483938 orphans, 15790 too large [>5000 bp], 11170035 duplicates)
Reads: 74785170 total, 62837 skipped (flags/unmapped)
Fragments: 37583447 total (37110480 tlen-paired, 3387 hash-paired, 1174 singletons, 12107 discordant, 456299 orphans, 6456 too large [>5000 bp], 11197929 duplicates)
Reads: 81026961 total, 55799 skipped (flags/unmapped)
Fragments: 40727617 total (40214034 tlen-paired, 3834 hash-paired, 1188 singletons, 8653 discordant, 499908 orphans, 8512 too large [>5000 bp], 11941894 duplicates)
Reads: 84266260 total, 107799 skipped (flags/unmapped)
Fragments: 42582481 total (41016270 tlen-paired, 3705 hash-paired, 1199 singletons, 310177 discordant, 1251130 orphans, 122914 too large [>5000 bp], 12480732 duplicates)