Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BPLF-N1-BDNA-1_2375WFLT3_s45.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPLF-N1-BDNA-1_2375WFLT3_s45.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPLF-N1-BDNA-1_2375WFLT3_s45.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BPLF-N1-BDNA-1_2375WFLT3_s45.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61049569 total, 50357 skipped (flags/unmapped)
Fragments: 30682026 total (30275617 tlen-paired, 3118 hash-paired, 897 singletons, 8479 discordant, 393915 orphans, 14986 too large [>5000 bp], 8798661 duplicates)
Reads: 60603313 total, 53839 skipped (flags/unmapped)
Fragments: 30455403 total (30070371 tlen-paired, 3611 hash-paired, 978 singletons, 9977 discordant, 370466 orphans, 5056 too large [>5000 bp], 8832124 duplicates)
Reads: 66744967 total, 47816 skipped (flags/unmapped)
Fragments: 33547475 total (33124023 tlen-paired, 2827 hash-paired, 1003 singletons, 7136 discordant, 412486 orphans, 7845 too large [>5000 bp], 9530197 duplicates)
Reads: 68280445 total, 93769 skipped (flags/unmapped)
Fragments: 34503470 total (33225184 tlen-paired, 2211 hash-paired, 1019 singletons, 253835 discordant, 1021221 orphans, 100988 too large [>5000 bp], 9824535 duplicates)