Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_2375WFLT3_s10.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_2375WFLT3_s10.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_2375WFLT3_s10.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3OH-N1-BDNA-1_2375WFLT3_s10.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71204473 total, 51301 skipped (flags/unmapped)
Fragments: 35792734 total (35330358 tlen-paired, 3018 hash-paired, 1124 singletons, 8844 discordant, 449390 orphans, 9109 too large [>5000 bp], 10006150 duplicates)
Reads: 65561815 total, 52608 skipped (flags/unmapped)
Fragments: 32955782 total (32511252 tlen-paired, 4234 hash-paired, 940 singletons, 10137 discordant, 429219 orphans, 13901 too large [>5000 bp], 9293031 duplicates)
Reads: 65256177 total, 57321 skipped (flags/unmapped)
Fragments: 32797308 total (32375594 tlen-paired, 2889 hash-paired, 1010 singletons, 12157 discordant, 405658 orphans, 5454 too large [>5000 bp], 9331097 duplicates)
Reads: 73295248 total, 96103 skipped (flags/unmapped)
Fragments: 37041768 total (35663507 tlen-paired, 3317 hash-paired, 1095 singletons, 271657 discordant, 1102192 orphans, 109448 too large [>5000 bp], 10370627 duplicates)