Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_FWL-N1-BDNA-1_2375WFLT3_s66.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FWL-N1-BDNA-1_2375WFLT3_s66.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FWL-N1-BDNA-1_2375WFLT3_s66.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_FWL-N1-BDNA-1_2375WFLT3_s66.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55352295 total, 49666 skipped (flags/unmapped)
Fragments: 27799608 total (27480634 tlen-paired, 3562 hash-paired, 830 singletons, 9671 discordant, 304911 orphans, 4577 too large [>5000 bp], 7550402 duplicates)
Reads: 60393923 total, 42437 skipped (flags/unmapped)
Fragments: 30336257 total (29992739 tlen-paired, 2326 hash-paired, 878 singletons, 6552 discordant, 333762 orphans, 6806 too large [>5000 bp], 8123561 duplicates)
Reads: 61009452 total, 46229 skipped (flags/unmapped)
Fragments: 30642442 total (30283990 tlen-paired, 2690 hash-paired, 920 singletons, 9169 discordant, 345673 orphans, 12466 too large [>5000 bp], 8254278 duplicates)
Reads: 61854283 total, 80825 skipped (flags/unmapped)
Fragments: 31225680 total (30189567 tlen-paired, 2620 hash-paired, 927 singletons, 197925 discordant, 834641 orphans, 78833 too large [>5000 bp], 8373431 duplicates)