Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_2IN-N1-BDNA-1_2375WFLT3_s07.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_2IN-N1-BDNA-1_2375WFLT3_s07.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_2IN-N1-BDNA-1_2375WFLT3_s07.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_2IN-N1-BDNA-1_2375WFLT3_s07.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53872234 total, 47518 skipped (flags/unmapped)
Fragments: 27049959 total (26753676 tlen-paired, 2780 hash-paired, 864 singletons, 10019 discordant, 282620 orphans, 4141 too large [>5000 bp], 7348210 duplicates)
Reads: 59400154 total, 44763 skipped (flags/unmapped)
Fragments: 29823685 total (29496370 tlen-paired, 2678 hash-paired, 909 singletons, 9572 discordant, 314156 orphans, 11543 too large [>5000 bp], 8017101 duplicates)
Reads: 58380837 total, 43659 skipped (flags/unmapped)
Fragments: 29311637 total (29000122 tlen-paired, 2386 hash-paired, 813 singletons, 6883 discordant, 301433 orphans, 8075 too large [>5000 bp], 7841425 duplicates)
Reads: 60456190 total, 80264 skipped (flags/unmapped)
Fragments: 30487881 total (29564978 tlen-paired, 3131 hash-paired, 904 singletons, 175598 discordant, 743270 orphans, 72169 too large [>5000 bp], 8177391 duplicates)