Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BNG8-N1-BDNA-1_2375WFLT3_s40.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNG8-N1-BDNA-1_2375WFLT3_s40.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNG8-N1-BDNA-1_2375WFLT3_s40.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNG8-N1-BDNA-1_2375WFLT3_s40.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68171017 total, 61987 skipped (flags/unmapped)
Fragments: 34298915 total (33781968 tlen-paired, 3506 hash-paired, 1084 singletons, 13133 discordant, 499224 orphans, 5754 too large [>5000 bp], 10229891 duplicates)
Reads: 73264397 total, 54942 skipped (flags/unmapped)
Fragments: 36868608 total (36311554 tlen-paired, 3053 hash-paired, 1086 singletons, 8848 discordant, 544067 orphans, 8696 too large [>5000 bp], 10834756 duplicates)
Reads: 75377860 total, 60379 skipped (flags/unmapped)
Fragments: 37923105 total (37348704 tlen-paired, 5608 hash-paired, 1126 singletons, 12272 discordant, 555395 orphans, 13896 too large [>5000 bp], 11194199 duplicates)
Reads: 76664034 total, 102440 skipped (flags/unmapped)
Fragments: 38852382 total (37102463 tlen-paired, 1783 hash-paired, 1292 singletons, 336698 discordant, 1410146 orphans, 134134 too large [>5000 bp], 11375270 duplicates)