Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_2375WFLT3_s35.recalibrated.bam.bai
The index file is older than the data file: 1029_BJH0-N1-BDNA-1_2375WFLT3_s35.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_2375WFLT3_s35.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BJH0-N1-BDNA-1_2375WFLT3_s35.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64024740 total, 55831 skipped (flags/unmapped)
Fragments: 32166859 total (31775306 tlen-paired, 3552 hash-paired, 1004 singletons, 12198 discordant, 374799 orphans, 5497 too large [>5000 bp], 8878843 duplicates)
Reads: 64016015 total, 52019 skipped (flags/unmapped)
Fragments: 32161390 total (31765982 tlen-paired, 2918 hash-paired, 948 singletons, 9742 discordant, 381800 orphans, 11982 too large [>5000 bp], 8784615 duplicates)
Reads: 69819333 total, 49978 skipped (flags/unmapped)
Fragments: 35081032 total (34659726 tlen-paired, 3377 hash-paired, 1026 singletons, 8804 discordant, 408099 orphans, 8208 too large [>5000 bp], 9497351 duplicates)
Reads: 71961400 total, 93744 skipped (flags/unmapped)
Fragments: 36331069 total (35095363 tlen-paired, 2564 hash-paired, 1145 singletons, 243794 discordant, 988203 orphans, 97433 too large [>5000 bp], 9862285 duplicates)