Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BFKM-N1-BDNA-1_2375WFLT3_s28.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BFKM-N1-BDNA-1_2375WFLT3_s28.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BFKM-N1-BDNA-1_2375WFLT3_s28.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BFKM-N1-BDNA-1_2375WFLT3_s28.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61225074 total, 47481 skipped (flags/unmapped)
Fragments: 30782393 total (30356019 tlen-paired, 2950 hash-paired, 1006 singletons, 9135 discordant, 413283 orphans, 13548 too large [>5000 bp], 8216783 duplicates)
Reads: 61332693 total, 53185 skipped (flags/unmapped)
Fragments: 30834888 total (30417869 tlen-paired, 3840 hash-paired, 1029 singletons, 11267 discordant, 400883 orphans, 5822 too large [>5000 bp], 8314506 duplicates)
Reads: 66423944 total, 46170 skipped (flags/unmapped)
Fragments: 33398559 total (32953698 tlen-paired, 2905 hash-paired, 1124 singletons, 7788 discordant, 433044 orphans, 7412 too large [>5000 bp], 8863372 duplicates)
Reads: 69124721 total, 90607 skipped (flags/unmapped)
Fragments: 34948864 total (33597568 tlen-paired, 2802 hash-paired, 1228 singletons, 266586 discordant, 1080680 orphans, 109147 too large [>5000 bp], 9267289 duplicates)