Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_3N0-N1-BDNA-1_2375WFLT3_s09.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3N0-N1-BDNA-1_2375WFLT3_s09.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3N0-N1-BDNA-1_2375WFLT3_s09.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_3N0-N1-BDNA-1_2375WFLT3_s09.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66951473 total, 61774 skipped (flags/unmapped)
Fragments: 33665981 total (33195592 tlen-paired, 3393 hash-paired, 1046 singletons, 11771 discordant, 454179 orphans, 6481 too large [>5000 bp], 9393767 duplicates)
Reads: 67381808 total, 55268 skipped (flags/unmapped)
Fragments: 33884361 total (33394526 tlen-paired, 5106 hash-paired, 979 singletons, 10081 discordant, 473669 orphans, 16233 too large [>5000 bp], 9349111 duplicates)
Reads: 72833240 total, 53080 skipped (flags/unmapped)
Fragments: 36630381 total (36121768 tlen-paired, 2743 hash-paired, 1084 singletons, 8372 discordant, 496414 orphans, 8448 too large [>5000 bp], 10031499 duplicates)
Reads: 75217491 total, 101343 skipped (flags/unmapped)
Fragments: 38056179 total (36501490 tlen-paired, 3805 hash-paired, 1175 singletons, 305550 discordant, 1244159 orphans, 124562 too large [>5000 bp], 10438250 duplicates)