Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_2375WFLT3_s05.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_2375WFLT3_s05.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_2375WFLT3_s05.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1G0-N1-BDNA-1_2375WFLT3_s05.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78088052 total, 68465 skipped (flags/unmapped)
Fragments: 39233695 total (38754454 tlen-paired, 4738 hash-paired, 1344 singletons, 13778 discordant, 459381 orphans, 6461 too large [>5000 bp], 11621258 duplicates)
Reads: 83851817 total, 59167 skipped (flags/unmapped)
Fragments: 42133598 total (41627697 tlen-paired, 3330 hash-paired, 1177 singletons, 9339 discordant, 492055 orphans, 9343 too large [>5000 bp], 12318180 duplicates)
Reads: 85425885 total, 63553 skipped (flags/unmapped)
Fragments: 42921235 total (42387184 tlen-paired, 5337 hash-paired, 1154 singletons, 13086 discordant, 514474 orphans, 17745 too large [>5000 bp], 12585961 duplicates)
Reads: 87790415 total, 112334 skipped (flags/unmapped)
Fragments: 44345089 total (42784272 tlen-paired, 3639 hash-paired, 1307 singletons, 301097 discordant, 1254774 orphans, 121992 too large [>5000 bp], 12940057 duplicates)