Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BK2H-N1-BDNA-1_2375WFLT3_s36.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BK2H-N1-BDNA-1_2375WFLT3_s36.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BK2H-N1-BDNA-1_2375WFLT3_s36.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BK2H-N1-BDNA-1_2375WFLT3_s36.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 67228244 total, 59265 skipped (flags/unmapped)
Fragments: 33787738 total (33353643 tlen-paired, 3504 hash-paired, 1068 singletons, 12132 discordant, 417391 orphans, 5981 too large [>5000 bp], 9818359 duplicates)
Reads: 67289396 total, 56450 skipped (flags/unmapped)
Fragments: 33818199 total (33369624 tlen-paired, 3103 hash-paired, 962 singletons, 10112 discordant, 434398 orphans, 15954 too large [>5000 bp], 9723939 duplicates)
Reads: 73384126 total, 53061 skipped (flags/unmapped)
Fragments: 36886440 total (36416463 tlen-paired, 2993 hash-paired, 1115 singletons, 8641 discordant, 457228 orphans, 8264 too large [>5000 bp], 10497689 duplicates)
Reads: 75261555 total, 102076 skipped (flags/unmapped)
Fragments: 38033320 total (36623759 tlen-paired, 1806 hash-paired, 1426 singletons, 277300 discordant, 1129029 orphans, 111647 too large [>5000 bp], 10862474 duplicates)