Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_8AV-N1-BDNA-1_2375WFLT3_s17.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_8AV-N1-BDNA-1_2375WFLT3_s17.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_8AV-N1-BDNA-1_2375WFLT3_s17.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_8AV-N1-BDNA-1_2375WFLT3_s17.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 70577333 total, 62527 skipped (flags/unmapped)
Fragments: 35465803 total (35022288 tlen-paired, 4199 hash-paired, 1031 singletons, 11714 discordant, 426571 orphans, 5401 too large [>5000 bp], 10461891 duplicates)
Reads: 71235687 total, 56794 skipped (flags/unmapped)
Fragments: 35798650 total (35350253 tlen-paired, 4232 hash-paired, 976 singletons, 9294 discordant, 433895 orphans, 8232 too large [>5000 bp], 10463085 duplicates)
Reads: 76935923 total, 57444 skipped (flags/unmapped)
Fragments: 38666565 total (38180418 tlen-paired, 3589 hash-paired, 1166 singletons, 8341 discordant, 473051 orphans, 9783 too large [>5000 bp], 11209809 duplicates)
Reads: 79718595 total, 102695 skipped (flags/unmapped)
Fragments: 40278549 total (38813676 tlen-paired, 2109 hash-paired, 1186 singletons, 290526 discordant, 1171052 orphans, 115520 too large [>5000 bp], 11680273 duplicates)