Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1029_1H5-N1-BDNA-1_2375WFLT3_s06.recalibrated.bam.baiThe index file is older than the data file: 1029_1H5-N1-BDNA-1_2375WFLT3_s06.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1029_1H5-N1-BDNA-1_2375WFLT3_s06.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_1H5-N1-BDNA-1_2375WFLT3_s06.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 73660772 total, 62338 skipped (flags/unmapped)
Fragments: 36989895 total (36564507 tlen-paired, 8078 hash-paired, 1010 singletons, 10454 discordant, 405846 orphans, 12750 too large [>5000 bp], 9999367 duplicates)
Reads: 80029284 total, 58567 skipped (flags/unmapped)
Fragments: 40190652 total (39747228 tlen-paired, 3714 hash-paired, 1269 singletons, 9541 discordant, 428900 orphans, 9791 too large [>5000 bp], 10808459 duplicates)
Reads: 73125222 total, 68691 skipped (flags/unmapped)
Fragments: 36719967 total (36305965 tlen-paired, 5006 hash-paired, 1162 singletons, 13463 discordant, 394371 orphans, 6065 too large [>5000 bp], 10016941 duplicates)
Reads: 82010724 total, 106340 skipped (flags/unmapped)
Fragments: 41369123 total (40072559 tlen-paired, 2984 hash-paired, 1229 singletons, 253078 discordant, 1039273 orphans, 103320 too large [>5000 bp], 11150675 duplicates)