Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_2375WFLT3_s61.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_2375WFLT3_s61.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_2375WFLT3_s61.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_EM-N1-BDNA-1_2375WFLT3_s61.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53354498 total, 50847 skipped (flags/unmapped)
Fragments: 26803785 total (26479822 tlen-paired, 3675 hash-paired, 896 singletons, 8703 discordant, 310689 orphans, 3833 too large [>5000 bp], 7464319 duplicates)
Reads: 57768920 total, 45077 skipped (flags/unmapped)
Fragments: 29022925 total (28676857 tlen-paired, 2685 hash-paired, 865 singletons, 5990 discordant, 336528 orphans, 7693 too large [>5000 bp], 7959571 duplicates)
Reads: 60212336 total, 85129 skipped (flags/unmapped)
Fragments: 30412853 total (29337265 tlen-paired, 2518 hash-paired, 941 singletons, 206695 discordant, 865434 orphans, 83938 too large [>5000 bp], 8325831 duplicates)
Reads: 59049455 total, 48648 skipped (flags/unmapped)
Fragments: 29664226 total (29296127 tlen-paired, 4468 hash-paired, 887 singletons, 8572 discordant, 354172 orphans, 13707 too large [>5000 bp], 8172331 duplicates)