Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_I5W-N1-BDNA-1_2375WFLT3_s86.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I5W-N1-BDNA-1_2375WFLT3_s86.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I5W-N1-BDNA-1_2375WFLT3_s86.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_I5W-N1-BDNA-1_2375WFLT3_s86.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61897137 total, 53313 skipped (flags/unmapped)
Fragments: 31096553 total (30722860 tlen-paired, 3502 hash-paired, 1001 singletons, 11171 discordant, 358019 orphans, 4869 too large [>5000 bp], 8864250 duplicates)
Reads: 62361207 total, 50396 skipped (flags/unmapped)
Fragments: 31329905 total (30942154 tlen-paired, 2913 hash-paired, 920 singletons, 9401 discordant, 374517 orphans, 13219 too large [>5000 bp], 8826069 duplicates)
Reads: 68148941 total, 46945 skipped (flags/unmapped)
Fragments: 34239928 total (33836236 tlen-paired, 3165 hash-paired, 972 singletons, 8095 discordant, 391460 orphans, 7286 too large [>5000 bp], 9552661 duplicates)
Reads: 69833396 total, 85493 skipped (flags/unmapped)
Fragments: 35257190 total (34066507 tlen-paired, 3412 hash-paired, 1058 singletons, 232372 discordant, 953841 orphans, 94211 too large [>5000 bp], 9910059 duplicates)