Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_2375WFLT3_s71.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_2375WFLT3_s71.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_2375WFLT3_s71.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_GS7-N1-BDNA-1_2375WFLT3_s71.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 66410017 total, 59531 skipped (flags/unmapped)
Fragments: 33388959 total (32932681 tlen-paired, 3523 hash-paired, 1068 singletons, 13803 discordant, 437884 orphans, 5760 too large [>5000 bp], 9382508 duplicates)
Reads: 71975347 total, 53680 skipped (flags/unmapped)
Fragments: 36189084 total (35703276 tlen-paired, 2490 hash-paired, 1179 singletons, 9371 discordant, 472768 orphans, 8723 too large [>5000 bp], 10043694 duplicates)
Reads: 73423923 total, 58269 skipped (flags/unmapped)
Fragments: 36914630 total (36404882 tlen-paired, 3966 hash-paired, 1179 singletons, 13428 discordant, 491175 orphans, 14374 too large [>5000 bp], 10273431 duplicates)
Reads: 75030635 total, 99186 skipped (flags/unmapped)
Fragments: 37950198 total (36467822 tlen-paired, 2350 hash-paired, 1249 singletons, 285357 discordant, 1193420 orphans, 112861 too large [>5000 bp], 10498679 duplicates)