Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_PAP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93832198 total, 105016 skipped (flags/unmapped)
Fragments: 47167322 total (46524452 tlen-paired, 9570 hash-paired, 14893 singletons, 11918 discordant, 606489 orphans, 6960 too large [>5000 bp], 10168989 duplicates)
Reads: 100536898 total, 90923 skipped (flags/unmapped)
Fragments: 50552910 total (49856382 tlen-paired, 9483 hash-paired, 15133 singletons, 8136 discordant, 663776 orphans, 9532 too large [>5000 bp], 10900098 duplicates)
Reads: 103460451 total, 96049 skipped (flags/unmapped)
Fragments: 52012488 total (51299826 tlen-paired, 8718 hash-paired, 15787 singletons, 12018 discordant, 676139 orphans, 15676 too large [>5000 bp], 11174522 duplicates)
Reads: 106205527 total, 223061 skipped (flags/unmapped)
Fragments: 53711535 total (51486771 tlen-paired, 8989 hash-paired, 16145 singletons, 428191 discordant, 1771439 orphans, 173490 too large [>5000 bp], 11406383 duplicates)