Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_42D-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42D-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42D-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_42D-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71741865 total, 81612 skipped (flags/unmapped)
Fragments: 36241647 total (35392119 tlen-paired, 4257 hash-paired, 10988 singletons, 10470 discordant, 823813 orphans, 5880 too large [>5000 bp], 7236250 duplicates)
Reads: 72498074 total, 75400 skipped (flags/unmapped)
Fragments: 36632607 total (35752736 tlen-paired, 4766 hash-paired, 10909 singletons, 9139 discordant, 855057 orphans, 11713 too large [>5000 bp], 7284050 duplicates)
Reads: 78881733 total, 75366 skipped (flags/unmapped)
Fragments: 39869828 total (38906867 tlen-paired, 3825 hash-paired, 11835 singletons, 8001 discordant, 939300 orphans, 8923 too large [>5000 bp], 7900814 duplicates)
Reads: 83436486 total, 168044 skipped (flags/unmapped)
Fragments: 42630158 total (39514499 tlen-paired, 3919 hash-paired, 12093 singletons, 631936 discordant, 2467711 orphans, 243965 too large [>5000 bp], 8300626 duplicates)