Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5PQ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PQ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PQ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5PQ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88211825 total, 96858 skipped (flags/unmapped)
Fragments: 44380439 total (43699793 tlen-paired, 9145 hash-paired, 12356 singletons, 12944 discordant, 646201 orphans, 6323 too large [>5000 bp], 9677125 duplicates)
Reads: 95018296 total, 91639 skipped (flags/unmapped)
Fragments: 47810199 total (47073165 tlen-paired, 9091 hash-paired, 12701 singletons, 9152 discordant, 706090 orphans, 12525 too large [>5000 bp], 10425370 duplicates)
Reads: 97488970 total, 90770 skipped (flags/unmapped)
Fragments: 49052328 total (48299954 tlen-paired, 11117 hash-paired, 13315 singletons, 12551 discordant, 715391 orphans, 11125 too large [>5000 bp], 10660159 duplicates)
Reads: 100744379 total, 215397 skipped (flags/unmapped)
Fragments: 51026572 total (48659836 tlen-paired, 10161 hash-paired, 13741 singletons, 459427 discordant, 1883407 orphans, 186493 too large [>5000 bp], 10964039 duplicates)