Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_HI8-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HI8-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_HI8-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_HI8-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 53749121 total, 61121 skipped (flags/unmapped)
Fragments: 27164497 total (26505516 tlen-paired, 3159 hash-paired, 8820 singletons, 6356 discordant, 640646 orphans, 4236 too large [>5000 bp], 4973502 duplicates)
Reads: 59144129 total, 57091 skipped (flags/unmapped)
Fragments: 29909268 total (29156223 tlen-paired, 2883 hash-paired, 9457 singletons, 4626 discordant, 736079 orphans, 7019 too large [>5000 bp], 5454260 duplicates)
Reads: 59940420 total, 59799 skipped (flags/unmapped)
Fragments: 30304606 total (29551979 tlen-paired, 3596 hash-paired, 9681 singletons, 6496 discordant, 732854 orphans, 6972 too large [>5000 bp], 5515648 duplicates)
Reads: 62565568 total, 131833 skipped (flags/unmapped)
Fragments: 32037877 total (29509102 tlen-paired, 3156 hash-paired, 9994 singletons, 498974 discordant, 2016651 orphans, 192313 too large [>5000 bp], 5688907 duplicates)