Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_XI2-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_XI2-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_XI2-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_XI2-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82288348 total, 95910 skipped (flags/unmapped)
Fragments: 41396898 total (40764607 tlen-paired, 7862 hash-paired, 14383 singletons, 11889 discordant, 598157 orphans, 5591 too large [>5000 bp], 9232551 duplicates)
Reads: 89350495 total, 89029 skipped (flags/unmapped)
Fragments: 44963505 total (44260223 tlen-paired, 9211 hash-paired, 15479 singletons, 8663 discordant, 669929 orphans, 9932 too large [>5000 bp], 9996608 duplicates)
Reads: 93939209 total, 212508 skipped (flags/unmapped)
Fragments: 47580612 total (45366913 tlen-paired, 8052 hash-paired, 16111 singletons, 431592 discordant, 1757944 orphans, 169766 too large [>5000 bp], 10465920 duplicates)
Reads: 90737681 total, 92860 skipped (flags/unmapped)
Fragments: 45651684 total (44940705 tlen-paired, 8735 hash-paired, 15681 singletons, 11955 discordant, 674608 orphans, 15871 too large [>5000 bp], 10168470 duplicates)