Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_CPH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CPH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CPH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_CPH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86742699 total, 94834 skipped (flags/unmapped)
Fragments: 43545692 total (43066480 tlen-paired, 15323 hash-paired, 12850 singletons, 10046 discordant, 440993 orphans, 5162 too large [>5000 bp], 8868890 duplicates)
Reads: 94327999 total, 85555 skipped (flags/unmapped)
Fragments: 47358421 total (46842505 tlen-paired, 14980 hash-paired, 13667 singletons, 7240 discordant, 480029 orphans, 9649 too large [>5000 bp], 9643697 duplicates)
Reads: 95950607 total, 89412 skipped (flags/unmapped)
Fragments: 48168988 total (47628107 tlen-paired, 16732 hash-paired, 13824 singletons, 10226 discordant, 500099 orphans, 18571 too large [>5000 bp], 9746464 duplicates)
Reads: 98196887 total, 210397 skipped (flags/unmapped)
Fragments: 49504961 total (47920643 tlen-paired, 15428 hash-paired, 14406 singletons, 302246 discordant, 1252238 orphans, 121606 too large [>5000 bp], 9956694 duplicates)