Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_DNH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86005147 total, 84069 skipped (flags/unmapped)
Fragments: 43194484 total (42670016 tlen-paired, 11803 hash-paired, 12081 singletons, 10583 discordant, 490001 orphans, 17096 too large [>5000 bp], 8512617 duplicates)
Reads: 77774439 total, 84238 skipped (flags/unmapped)
Fragments: 39060690 total (38599502 tlen-paired, 10430 hash-paired, 11167 singletons, 10315 discordant, 429276 orphans, 4632 too large [>5000 bp], 7744332 duplicates)
Reads: 85130746 total, 78812 skipped (flags/unmapped)
Fragments: 42757771 total (42259628 tlen-paired, 10846 hash-paired, 12008 singletons, 6999 discordant, 468290 orphans, 8345 too large [>5000 bp], 8441299 duplicates)
Reads: 87760601 total, 195563 skipped (flags/unmapped)
Fragments: 44278969 total (42744100 tlen-paired, 11963 hash-paired, 12175 singletons, 291052 discordant, 1219679 orphans, 119477 too large [>5000 bp], 8671689 duplicates)