Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64725922 total, 60975 skipped (flags/unmapped)
Fragments: 32605614 total (32023800 tlen-paired, 4166 hash-paired, 9613 singletons, 7025 discordant, 561010 orphans, 12171 too large [>5000 bp], 5649247 duplicates)
Reads: 58416177 total, 64697 skipped (flags/unmapped)
Fragments: 29423066 total (28907570 tlen-paired, 4805 hash-paired, 8809 singletons, 7339 discordant, 494543 orphans, 4350 too large [>5000 bp], 5127571 duplicates)
Reads: 67080920 total, 136247 skipped (flags/unmapped)
Fragments: 34084743 total (32198303 tlen-paired, 4902 hash-paired, 10035 singletons, 369079 discordant, 1502424 orphans, 143823 too large [>5000 bp], 5812061 duplicates)
Reads: 64250243 total, 58388 skipped (flags/unmapped)
Fragments: 32373034 total (31795532 tlen-paired, 4033 hash-paired, 9584 singletons, 5200 discordant, 558685 orphans, 7028 too large [>5000 bp], 5623421 duplicates)