Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_ROX-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ROX-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_ROX-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ROX-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64426367 total, 73957 skipped (flags/unmapped)
Fragments: 32419950 total (31908571 tlen-paired, 6757 hash-paired, 10580 singletons, 8378 discordant, 485664 orphans, 4377 too large [>5000 bp], 5728052 duplicates)
Reads: 70349364 total, 71021 skipped (flags/unmapped)
Fragments: 35406629 total (34840285 tlen-paired, 8277 hash-paired, 11301 singletons, 6356 discordant, 540410 orphans, 8398 too large [>5000 bp], 6227898 duplicates)
Reads: 71319910 total, 72214 skipped (flags/unmapped)
Fragments: 35892577 total (35316880 tlen-paired, 8503 hash-paired, 11250 singletons, 8782 discordant, 547162 orphans, 10477 too large [>5000 bp], 6308012 duplicates)
Reads: 73264321 total, 153723 skipped (flags/unmapped)
Fragments: 37139800 total (35328879 tlen-paired, 7465 hash-paired, 11676 singletons, 351102 discordant, 1440678 orphans, 141676 too large [>5000 bp], 6441135 duplicates)