Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5BE-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5BE-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5BE-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5BE-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78959802 total, 94461 skipped (flags/unmapped)
Fragments: 39734290 total (39101335 tlen-paired, 6050 hash-paired, 13395 singletons, 12076 discordant, 601434 orphans, 5795 too large [>5000 bp], 8727065 duplicates)
Reads: 86388189 total, 88241 skipped (flags/unmapped)
Fragments: 43480552 total (42784072 tlen-paired, 5815 hash-paired, 14201 singletons, 8863 discordant, 667601 orphans, 10323 too large [>5000 bp], 9527086 duplicates)
Reads: 87006562 total, 91561 skipped (flags/unmapped)
Fragments: 43788218 total (43081974 tlen-paired, 7177 hash-paired, 14577 singletons, 12706 discordant, 671784 orphans, 12463 too large [>5000 bp], 9587312 duplicates)
Reads: 90400025 total, 212905 skipped (flags/unmapped)
Fragments: 45809698 total (43595874 tlen-paired, 8295 hash-paired, 15211 singletons, 430265 discordant, 1760053 orphans, 171494 too large [>5000 bp], 9863787 duplicates)