Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_42G-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_42G-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_42G-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_42G-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96944871 total, 107646 skipped (flags/unmapped)
Fragments: 48671567 total (48123083 tlen-paired, 16204 hash-paired, 16402 singletons, 12955 discordant, 502923 orphans, 6708 too large [>5000 bp], 10258585 duplicates)
Reads: 105266138 total, 95964 skipped (flags/unmapped)
Fragments: 52853712 total (52266934 tlen-paired, 16709 hash-paired, 17324 singletons, 9159 discordant, 543586 orphans, 11830 too large [>5000 bp], 11130915 duplicates)
Reads: 106699178 total, 101533 skipped (flags/unmapped)
Fragments: 53570494 total (52953342 tlen-paired, 19057 hash-paired, 17739 singletons, 12862 discordant, 567494 orphans, 20945 too large [>5000 bp], 11234307 duplicates)
Reads: 109011900 total, 234550 skipped (flags/unmapped)
Fragments: 54960586 total (53190459 tlen-paired, 18379 hash-paired, 17996 singletons, 332454 discordant, 1401298 orphans, 137736 too large [>5000 bp], 11452680 duplicates)