Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_65R-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65R-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65R-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_65R-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 89825701 total, 97854 skipped (flags/unmapped)
Fragments: 45168167 total (44523830 tlen-paired, 12028 hash-paired, 15997 singletons, 11482 discordant, 604830 orphans, 6170 too large [>5000 bp], 9564275 duplicates)
Reads: 90501474 total, 90987 skipped (flags/unmapped)
Fragments: 45510652 total (44835849 tlen-paired, 12987 hash-paired, 15999 singletons, 10151 discordant, 635666 orphans, 20424 too large [>5000 bp], 9583360 duplicates)
Reads: 98859477 total, 92428 skipped (flags/unmapped)
Fragments: 49717224 total (49004273 tlen-paired, 13636 hash-paired, 17255 singletons, 8364 discordant, 673696 orphans, 11776 too large [>5000 bp], 10470047 duplicates)
Reads: 102427841 total, 208802 skipped (flags/unmapped)
Fragments: 51809861 total (49614712 tlen-paired, 13380 hash-paired, 17937 singletons, 435702 discordant, 1728130 orphans, 172692 too large [>5000 bp], 10798219 duplicates)