Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_BNK6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNK6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNK6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_BNK6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65916596 total, 70864 skipped (flags/unmapped)
Fragments: 33091963 total (32729698 tlen-paired, 9391 hash-paired, 11838 singletons, 6840 discordant, 334196 orphans, 3920 too large [>5000 bp], 5648640 duplicates)
Reads: 72615301 total, 67411 skipped (flags/unmapped)
Fragments: 36456709 total (36050313 tlen-paired, 10551 hash-paired, 12545 singletons, 7425 discordant, 375875 orphans, 11446 too large [>5000 bp], 6188712 duplicates)
Reads: 71606717 total, 63690 skipped (flags/unmapped)
Fragments: 35954307 total (35558860 tlen-paired, 9968 hash-paired, 12416 singletons, 5062 discordant, 368001 orphans, 7415 too large [>5000 bp], 6117210 duplicates)
Reads: 74522921 total, 154742 skipped (flags/unmapped)
Fragments: 37577460 total (36357150 tlen-paired, 10186 hash-paired, 13363 singletons, 233051 discordant, 963710 orphans, 95166 too large [>5000 bp], 6341820 duplicates)