Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OFT-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 105772285 total, 112171 skipped (flags/unmapped)
Fragments: 53122289 total (52496338 tlen-paired, 15019 hash-paired, 16106 singletons, 12940 discordant, 581886 orphans, 6764 too large [>5000 bp], 12012344 duplicates)
Reads: 116141675 total, 101825 skipped (flags/unmapped)
Fragments: 58336569 total (57655725 tlen-paired, 14696 hash-paired, 17403 singletons, 8860 discordant, 639885 orphans, 12000 too large [>5000 bp], 13160635 duplicates)
Reads: 117025257 total, 109159 skipped (flags/unmapped)
Fragments: 58778027 total (58059515 tlen-paired, 17682 hash-paired, 17484 singletons, 13018 discordant, 670328 orphans, 23928 too large [>5000 bp], 13198822 duplicates)
Reads: 120342426 total, 246932 skipped (flags/unmapped)
Fragments: 60733137 total (58607519 tlen-paired, 17758 hash-paired, 18025 singletons, 408384 discordant, 1681451 orphans, 164348 too large [>5000 bp], 13550049 duplicates)