Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4E9-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4E9-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_4E9-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_4E9-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78945983 total, 79424 skipped (flags/unmapped)
Fragments: 39751927 total (39087327 tlen-paired, 5528 hash-paired, 9625 singletons, 10567 discordant, 638880 orphans, 5605 too large [>5000 bp], 7702667 duplicates)
Reads: 79225751 total, 74581 skipped (flags/unmapped)
Fragments: 39895141 total (39209031 tlen-paired, 6835 hash-paired, 9517 singletons, 9587 discordant, 660171 orphans, 15288 too large [>5000 bp], 7699239 duplicates)
Reads: 87364212 total, 75999 skipped (flags/unmapped)
Fragments: 43998316 total (43256370 tlen-paired, 6115 hash-paired, 9986 singletons, 8060 discordant, 717785 orphans, 9676 too large [>5000 bp], 8484820 duplicates)
Reads: 90442508 total, 184627 skipped (flags/unmapped)
Fragments: 45875452 total (43535145 tlen-paired, 6139 hash-paired, 10660 singletons, 464805 discordant, 1858703 orphans, 188170 too large [>5000 bp], 8717950 duplicates)